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首页>山东大学数学学院系统与运筹学研究所刘丙强教授简介

山东大学数学学院系统与运筹学研究所刘丙强教授简介

刘丙强,1983 年 5 月生;副教授。

Email:bingqiang@sdu.edu.cn l

教育经历

2007.01—2010.01,美国佐治亚大学,联合培养博士;

2006.09—2010.07,山东大学数学学院,运筹学与控制论,博士学位;

2003.09—2006.07,山东大学数学学院,运筹学与控制论,硕士学位;

1999.09—2003.07,山东大学数学学院,基础数学,学士学位; l

工作经历

2013.09—,山东大学数学学院,副教授;

2010.07—2013.08,山东大学数学学院,讲师; l 研究方向 生物信息学,组合最优化,图论及其应用; l 科研项目

2014-08,基于高通量 RNA-seq 数据转录组拼接的关键技术与算法研究,国 家自然科学基金重点项目,参与人;

2013-08,基于 ChIP-seq 数据和系统发生信息的调控模体预测,国家自然科 学基金青年基金,负责人;

2012-10,仅基于 RNA-Seq 数据拼装可变剪接转录组的计算方法研究,国家 自然科学基金面上项目,第一参与人;

2011-07,基于系统发生足迹法的原核生物调控模体预测,山东省自然科学 基金委青年基金,负责人;

2011-11,原核生物共调控基因的计算预测,山东省博士后创新基金,负责 人; l 学术论文 (*通讯作者,#共同第一作者)

 

1. An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes, Bingqiang Liu, Hanyuan Zhang, Chuan Zhou, Guojun Li, Anne Fennell, Guanghui Wang, Yu Kang, Qi Liu and Qin Ma*, BMC Genomics 2016, 17:578. (SCI, IF 3.867)

2. Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses, Bingqiang Liu, Chuan Zhou, Guojun Li*, Hanyuan Zhang, Erliang Zeng, Qi Liu and Qin Ma*, Scientific Reports 2016, 6:23030. (SCI, IF 5.228)

3. An Insight into Species from Same Descendent Aspect and the Application into Clostridia, Zhenjia Wang#, Chuan Zhou#, Zheng Chang, Bingqiang Liu*, Qin Ma and Guojun Li*, Current Bioinformatics 2016, 11(5). (SCI, IF 0.770)

4. BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data. Juntao Liu, Guojun Li*, Zheng Chang, Ting Yu, Bingqiang Liu, Rick McMullen, Pengyin Chen, Xiuzhen Huang*, PloS Computational Biology 2016, 12(2): e1004772. (SCI, IF 4.620)

5. Goldindec: A Novel Algorithm for Raman Spectrum Baseline Correction, Juntao Liu, Jianyang Sun, Xiuzhen Huang, Guojun Li, Binqiang Liu*, Applied spectroscopy 2015, 69 (7): 834-842. (SCI, IF 1.798)

6. Revisiting operons: an analysis of the landscape of transcriptional units in E. coli, Xizeng Mao#, Qin Ma#, Bingqiang Liu, Xin Chen, Hanyuan Zhang and Ying Xu, BMC Bioinformatics 2015, 16:356. (SCI, IF 2.576)

7. Global O-GlcNAc levels modulate transcription of the adipocyte secretome during chronic insulin resistance, Edith E. Wollaston-Hayden, Ruth B. S. Harris, Bingqiang Liu, Robert Bridger, Ying Xu and Lance Wells*, Frontiers in Endocrinology 2015, Jan. (5), 223.

8. Neighbor sum distinguishing total colorings of planar graphs, Hualong Li, Laihao Ding, Bingqiang Liu, Guanghui Wang*, Journal of Combinatorial Optimization, 2015, 30(3): 675-688, (SCI, IF 1.043)

9. New Insights into Clostridia Through Comparative Analyses of Their 40 Genomes, Chuan Zhou#, Qin Ma#, Xizeng Mao#, Bingqiang Liu, Yanbin Yin and Ying Xu*, Bioenerg. Res. 2014, 7:1481–1492. (SCI, 3.541)

10. DMINDA: an integrated web server for DNA motif identification and analyses. Qin Ma, Hanyuan Zhang, Xizeng Mao, Chuan Zhou, Bingqiang Liu, Xin Chen and Ying Xu*, Nucleic Acids Res 2014, 42, W12-19. (sci, IF 8.278)

11. Bi-factor Analysis Based on Noise-Reduction (BIFANR): A New Algorithm for Detecting Coevolving Amino Acid Sites in Proteins, J untao Liu, Xiaoyun Duan, Jianyang Sun, Yanbin Yin, Lushan Wang, Guojun Li, Bingqiang Liu*, PLOS One 2013, Volume 8, Issue 11, e79764. (SCI, IF 4.092, Corresponding author).

12. An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale, Qin Ma#, Bingqiang Liu#, Chuan Zhou, Yanbin Yin, Guojun Li, Ying Xu, Bioinformatics 29 (18), 2261-2268. (SCI, IF 5.323, Co-first).

13. Neighbor sum distinguishing total colorings of K 4-minor free graphs, Hualong Li, Bingqiang Liu, Guanghui Wang, Frontiers of Mathematics in China, 1-16. (SCI, IF 0.323).

14. A note on rainbow matchings, Guanghui Wang*, Bingqiang Liu, Guizhen Liu, Discrete Mathematics, Algorithms and Applications 2013, 5(4): 1350028.

15. A New Framework for Identifying cis Regulatory Motifs in Prokaryotes, Guojun. Li#, Bingqiang Liu#, Qin Ma, Ying Xu, Nucleic Acids Researchh, Vol. 39, No. 7, e42, 2011. (sci, IF 8.278, Co-first).

16. Accurate Recognition of cis Regulatory Motifs with the Correct Lengths in Prokaryotic Genomes, Guojun. Li#, Bingqiang Liu#, Ying Xu, Nucleic Acids Research, Vol. 38, No. 2, e12, 2010. (sci, IF 8.026, Co-first).

17. A Close-to Optimum Bi-clustering Algorithm for Microarray Gene Expression Data. Guojun Li, Qin Ma, Bingqiang Liu, Haibao Tang, Andrew H. Paterson, Ying Xu, CSB 2009, Stanford.

18. Sorting signed permutations by fixed-length reversals. Xingqin Qi, Guojun Li, Jichang Wu, Bingqiang Liu, International Journal of Functions of Computer Science. Vol.17, No.4, 2006, Page 993-948. (sci, IF 0.554).

 

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